Channel models for DNA Word Design

نویسندگان

  • Luca Bortolussi
  • Andrea Sgarro
چکیده

Introduction. We deal with DNA word design problem, i.e. the construction of codes of DNA strings under some biological combinatorial constraints. The point of view taken here is that of channel coding theory, meaning that we try to explain DNA coding by identifying a suitable channel and a suitable decoding mechanism. The coding theoretic framework used is based on the rather general concept of distinguishability, as developed in [4]. In the following, we fist give a brief overview of DNA word design and of the distinguishability framework, and then we focus on the definition and the analysis of DNA channels. A provably equivalent point of view, based on possibilistic channel, is underpinned in [1].

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

منابع مشابه

DNA Code Word Design

The design of codes that satisfy combinatorial constraints is motivated by the problem of sending information reliably over a noisy channel and has been studied for a long time. There are lots of studies on binary code design where the alphabet consists of 2 letters {0, 1}. Recently, designing codes over 4 letters alphabet, which is motivated by the task of storing and retrieving information in...

متن کامل

Novel structure of optical add/drop filters and multi-channel filter based on photonic crystal for using in optical telecommunication devices

In this paper, Using a 2D photonic crystal and a novel square ring resonator,several compact and simple structures have been introduced in the present paper toconstruct optical add/drop filters and multi-channel filter. The difference structures hasbeen designed and simulated by using the proposed square ring resonator and differentdropping waveguides. To do analyses, th...

متن کامل

Possibilistic Channels for DNA Word Design

We deal with DNA combinatorial code constructions, as found in the literature, taking the point of view of possibilistic information theory and possibilistic coding theory. The possibilistic framework allows one to tackle an intriguing information-theoretic question: what is channel noise in molecular computation? We examine in detail two representative DNA string distances used for DNA code co...

متن کامل

کاربرد مدل های k-? خطی و غیر خطی در پیش بینی جریان و انتقال حرارت جا به جائی در کانال های با موانع منفصل

Roughness elements or turbulence promoters have been widely used to enhance heat transfer in cooling passages of modern gas turbine blades. Although such ribs substantially enhance heat transfer, the heat transfer coefficient is reduced immediately at corner downstream of each rib, creating hot spots. To remove such hot spots some of the ribs can be detached from the channel walls. In this pape...

متن کامل

Assessment of Turbulent Models in Computation of Strongly Curved Open Channel Flows

Several rigorous turbulent models have been developed in the past years and it can be seen that more research is needed to reach a better understanding of their generality and precision by verifying their applications for distinct hydraulic phenomena; under certain assumptions. This survey evaluates the performance of Standard k-ε, Realizable k-ε, RNG k-ε, k-ω and RSM models in predicting flow ...

متن کامل

ذخیره در منابع من


  با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

عنوان ژورنال:

دوره   شماره 

صفحات  -

تاریخ انتشار 2006